For tiger populations, a new threat

This is an Amur tiger photographed by camera trap. Credit: WCS Russia Program

Along with the pressures of habitat loss, poaching and depletion of prey species, a new threat to tiger populations in the wild has surfaced in the form of disease, specifically, canine distemper virus (CDV). According to a new study from the Wildlife Conservation Society (WCS) and its partners, CDV has the potential to be a significant driver in pushing the animals toward extinction.

While CDV has recently been shown to lead to the deaths of individual tigers, its long-term impacts on tiger populations had never before been studied.

The authors evaluated these impacts on the Amur tiger population in Russia's Sikhote-Alin Biosphere Zapovednik (SABZ), where tiger numbers declined from 38 individuals to 9 in the years 2007 to 2012. In 2009 and 2010, six adult tigers died or disappeared from the reserve, and CDV was confirmed in two dead tigers -- leading scientists to believe that CDV likely played a role in the overall decline of the population. Joint investigations of CDV have been an ongoing focus of WCS and Russian scientists at Sikhote-Alin Zapovednik and veterinarians at the regional Primorye Agricultural College since its first appearance in tigers in 2003.

A key finding of this study: Modeling shows that smaller populations of tigers were found to be more vulnerable to extinction by CDV. Populations consisting of 25 individuals were 1.65 times more likely to decline in the next 50 years when CDV was present. The results are profoundly disturbing for global wild tigers given that in most sites where wild tigers persist they are limited to populations of less than 25 adult breeding individuals.

The scientists used computer modeling to simulate the effects of CDV infection on isolated tiger populations of various sizes and through a series of transmission scenarios. These included tiger-to-tiger transmission and transmission through predation on CDV-infected domestic dogs and/or infected wild carnivores (such as foxes, raccoon dogs and badgers). High and low-risk scenarios for the model were created based on variation in the prevalence of CDV and the tigers' contact with sources of exposure.

Results showed that CDV infection increased the 50-year extinction probability of tigers in SABZ as much as 55.8 percent compared to CDV-free populations of equivalent size.

"Although we knew that individual tigers had died from CDV in the wild, we wanted to understand the risk the virus presents to whole populations," said WCS veterinarian Martin Gilbert. "Tigers are elusive, however, and studying the long-term impact of risk factors is very challenging. Our model, based on tiger ecology data collected over 20 years in SABZ, explored the different ways that tigers might be exposed to the virus and how these impact the extinction risk to tiger populations over the long term."

WCS Russia Program Director Dale Miquelle said, "Tigers face an array of threats throughout their range, from poaching to competition with humans for space and for food. 

Consequently, many tiger populations have become smaller and more fragmented, making them much more susceptible to diseases such as CDV. While we must continue to focus on the primary threats of poaching and habitat destruction, we now must also be prepared to deal with the appearance of such diseases in the future."

Priorities for future research, according to the authors, include identifying the domestic and wild carnivore species that contribute to the CDV reservoir, and those that are the most likely sources of infection for tigers. Tigers are too rare to sustain the virus in the long term, so CDV must rely on more abundant carnivore species to persist in the environment. 

Understanding the structure of the CDV reservoir will be a critical first step in identifying measures that might prevent or control future outbreaks. In addition, since we now know that small tiger populations are at greater risk to diseases such as CDV than larger populations, conservation strategies focusing on connectedness between populations become all the more important. "Estimating the potential impact of canine distemper virus on the Amur tiger population (Panthera tigris altaica) in Russia," appears in the current online edition of PloSONE. Authors include: Martin Gilbert of WCS and Boyd Orr Centre for Population and Ecosystem Health at the University of Glasgow; Dale G. Miquelle of WCS; John M. Goodrich of Panthera; Richard Reeve, Sarah Cleaveland and Louise Matthews of Boyd Orr Centre for Population and Ecosystem Health at the University of Glasgow; and Damien Joly of WCS and Metabiota.

This study was made possible through generous support from Morris Animal Foundation, Zoo Boise Conservation Fund, AZA Tiger Species Survival Plan Tiger Conservation Campaign, and the Biotechnology and Biological Sciences Research Council.

"Morris Animal Foundation is thankful to Dr. Miquelle and his team for helping protect the Amur Tigers," said Diane Brown, DVM, PhD, DACVP and Chief Scientific Officer for Morris Animal Foundation. "Our Foundation values their hard work and dedication to this study and we look forward to many more partnerships with the Wildlife Conservation Society."

Source: Wildlife Conservation Society

Cat genome reveals clues to domestication​​

Cats and humans have shared the same households for at least 9,000 years, but we still know very little about how our feline friends became domesticated.

Cats and humans have shared the same households for at least 9,000 years, but we still know very little about how our feline friends became domesticated. An analysis of the cat genome led by researchers at Washington University School of Medicine in St. Louis reveals some surprising clues.

The research appears Nov. 10 in the Proceedings of the National Academy of Sciences Early Edition.

Cats have a relatively recent history of domestication compared with dogs; canines arose from wolves over 30,000 years ago.

"Cats, unlike dogs, are really only semidomesticated," said senior author Wes Warren, PhD, associate professor of genetics at The Genome Institute at Washington University​. "They only recently split off from wild cats, and some even still breed with their wild relatives. So we were surprised to find DNA evidence of their domestication."

One way scientists can understand the genetics of domestication is to look at what parts of the genome are altered in response to living together with humans, Warren added.
The researchers compared the genomes of domestic cats and wild cats, finding specific regions of the domestic cat genome that differed significantly.

The scientists found changes in the domestic cat's genes that other studies have shown are involved in behaviors such as memory, fear and reward-seeking. These types of behaviors -- particularly those when an animal seeks a reward -- generally are thought to be important in the domestication process.

"Humans most likely welcomed cats because they controlled rodents that consumed their grain harvests," said Warren. "We hypothesized that humans would offer cats food as a reward to stick around."

This meant that certain cats that would normally prefer to lead solitary lives in the wild had an additional incentive to stay with humans. Over time, humans preferred to keep cats that were more docile.

Cat genome project

The cat genome sequencing project, funded by the National Human Genome Research Institute, part of the National Institutes of Health (NIH), began in 2007. The project's initial goal was to study hereditary diseases in domestic cats, which are similar in some cases to those that afflict humans, including neurological disorders, and infectious and metabolic diseases.

To obtain the high-quality reference genome needed for this research, the team sequenced a domestic female Abyssinian cat named Cinnamon. They chose this particular cat because they could trace its lineage back several generations. This cat's family also had a particular degenerative eye disorder the researchers wanted to study.

To better understand characteristics of domestication, the researchers sequenced the genomes of select purebred domestic cats. Hallmarks of their domestication include features such as hair color, texture and patterns, as well as facial structure and how docile a cat is. Cats are bred for many of these types of characteristics. In fact, most modern breeds are the result of humans breeding cats for their favorite hair patterns.

The team also looked at a breed called Birman, which has characteristic white paws. The researchers traced the white pattern to just two small changes in a gene associated with hair color. They found that this genetic signature appears in all Birmans, likely showing that humans selectively bred these cats for their white paws and that the change to their genome happened in a remarkably short period of time.

The group also compared the cat genome with those of other mammals -- including a tiger, cow, dog and human -- to understand more about the genetics of cat biology.

"We looked at the underlying genetics to understand why certain abilities to survive in the wild evolved in cats and other carnivores," said Michael Montague, PhD, the study's first author and a postdoctoral research associate at The Genome Institute.

The differences they found in the cat genome help explain characteristics such as why cats are almost exclusively carnivorous and how their vision and sense of smell differ from other animals like dogs.

Solitary carnivores

To digest their fatty, meat-heavy meals, cats need genes to efficiently break down fats. The team found particular fat-metabolizing genes in carnivores such as cats and tigers that changed faster than can be explained by chance. This more rapid change generally means these genes provide some sort of digestive advantage to carnivores that only consume animal proteins. The researchers did not find such changes in the same genes of the cow and human, who eat more varied diets and would not need such enhancements.

Cats also rely less on smell to hunt than dogs. So it is not surprising that the researchers found fewer genes for smell in cats than dogs. But they did find more genes related to an alternate form of smell that detects chemicals called pheromones, which allow cats to monitor their social environment, including seeking out the opposite sex. This ability is not as important to dogs, which tend to travel in packs. But it is crucial in cats, which are more solitary and may have more difficulty finding mates.

Cats also have better hearing than most other carnivores, including an ability to hear in the ultrasonic range to better track prey. Their vision is also exceptional in low light.

"Cats tend to be more active at dawn and dusk," said Montague, "so they need to be able to detect movement in low light." Accordingly, the team identified specific genes that likely evolved to expand cats' hearing range and their vision in low light.

Even though the genomes of domestic cats have changed little since their split from wild cats, the new work shows that it is still possible to see evidence of the species' more recent domestication. "Using advanced genome sequencing technology, we were able to shed light on the genetic signatures of cats' unique biology and survival skills," said Warren. "And we were able to significantly jump start our knowledge about the evolution of cat domestication."

Collaborators in the research include Texas A&M University; University of Missouri-Columbia; University of California-Davis; Wellcome Trust Sanger Institute in the United Kingdom; Pompeu Fabra University in Spain; Centro de Analisis Genomico in Spain; Bilkent University in Turkey; Indiana Univeristy; Center for Cancer Research in Maryland; St. Petersburg State University in Russia; and Nova Southeastern University in Florida.

Source: Washington University in St. Louis

Study of mountain lion energetics shows the power of the pounce

The SMART wildlife collar is equipped with GPS, accelerometers, and a magnetometer to provide detailed data on where the animal is and what it is doing.

Scientists at UC Santa Cruz, using a new wildlife tracking collar they developed, were able to continuously monitor the movements of mountain lions in the wild and determine how much energy the big cats use to stalk, pounce, and overpower their prey.

The research team's findings, published October 3 in Science, help explain why most cats use a "stalk and pounce" hunting strategy. The new "SMART" wildlife collar--equipped with GPS, accelerometers, and other high-tech features--tells researchers not just where an animal is but what it is doing and how much its activities "cost" in terms of energy expenditure.

"What's really exciting is that we can now say, here's the cost of being a mountain lion in the wild and what they need in terms of calories to live in this environment," said first author Terrie Williams, a professor of ecology and evolutionary biology at UC Santa Cruz. "Understanding the energetics of wild animals moving in complex environments is valuable information for developing better wildlife management plans."

The researchers were able to quantify, for example, the high energetic costs of traveling over rugged terrain compared to the low cost of "cryptic" hunting behaviors such as sit-and-wait or stalk-and-ambush movements. During the actual pounce and kill, the cats invest a lot of energy in a short time to overpower their prey. Data from the collars showed that mountain lions adjust the amount of energy they put into the initial pounce to account for the size of their prey.

"They know how big a pounce they need to bring down prey that are much bigger than themselves, like a full-grown buck, and they'll use a much smaller pounce for a fawn," Williams said.

Cats on treadmills

Before Williams and her team could interpret the data from collars deployed on wild mountain lions, however, they first had to perform calibration studies with mountain lions in captivity. This meant, among other things, training mountain lions to walk and run on a treadmill and measuring their oxygen consumption at different activity levels. Those studies took a bit longer than planned.

"People just didn't believe you could get a mountain lion on a treadmill, and it took me three years to find a facility that was willing to try," Williams said.

Finally, she met Lisa Wolfe, a veterinarian with Colorado Parks and Wildlife, who had three captive mountain lions (siblings whose mother had been killed by a hunter) at a research facility near Fort Collins, Colorado. After eight months of training by Wolfe, the mountain lions were comfortable on the treadmill and Williams started collecting data.

Power animals

According to Williams, the treadmill data showed that mountain lions do not have the aerobic capacity for sustained, high-energy activity. "They are power animals. They have a slow routine walking speed and use a burst of speed and the force of the pounce to knock down or overpower their prey," she said.

In addition to the treadmill studies, the captive cats were videotaped wearing the collars while doing a wide range of activities in a large outdoor enclosure. This provided a library of collar acceleration signatures specific for different behaviors, from resting and grooming to running and pouncing. "We got all the different behaviors videotaped and analyzed with the corresponding accelerometer traces," Williams said.

Meanwhile, coauthor Chris Wilmers led a team that deployed the collars on wild cats in the Santa Cruz mountains. Wilmers, an associate professor of environmental studies at UC Santa Cruz, leads the Santa Cruz Puma Project, which has been tracking mountain lions in the area to study the effects of habitat fragmentation and developing new technology for understanding the animals' behavior and energetics.

"Because mountain lions are a cryptic animal, we can't really observe them hunting and killing prey. With the SMART collars, we can see how they go about doing that, what their strategies are, and how many calories they are expending to do it," Wilmers said. "The ability to estimate the field energetics of animals in the wild opens up a whole new suite of questions we can ask about the ecology of these animals, which ultimately informs not only our basic understanding of them but also their conservation and management."

State-of-the-art collars

Coauthor Gabriel Elkaim, professor of computer engineering at UCSC's Baskin School of Engineering, worked on signal processing of the accelerometer data and is continuing to develop the state-of-the-art tracking collars. The prototype used in this study, called the Species Movement, Acceleration, and Radio Tracking (SMART) wildlife collar, was developed by computer engineering graduate student Matthew Rutishauser. The collars include a GPS unit, accelerometers, and a magnetometer to provide detailed data on where an animal is and what it is doing. "We hope this will be an enabling technology to allow a much greater depth of understanding of animals in the wild," Elkaim said.

The researchers now want to look at mountain lion energetics in a range of different habitat types. In particular, Wilmers said, he is interested in how human land use and habitat fragmentation may be influencing the energetic demands on mountain lions in the wild. Williams and her students also have projects using the new collar technology to study other large carnivores, including wolves, polar bears, and Weddell seals.

"A lot of these large carnivore species are threatened or endangered, and understanding their physiological limitations has been a big missing piece in conservation planning," Williams said. "This technology gives us a whole new level understanding of what these animals are doing and what it costs them to live in the wild, and that can really help move the science of conservation forward."

In addition to Williams, Wilmers, Wolfe, and Elkaim, the coauthors of the paper include Tracy Davis at Colorado Parks and Wildlife; program manager Traci Kendall and head trainer Beau Richter in Williams's lab at UC Santa Cruz; and UCSC graduate students Yiwei Wang and Caleb Bryce. This research was funded by the National Science Foundation.

Source: University of California - Santa Cruz