Three new species of saddled loricariid catfishes, and a review of Hemiancistrus, Peckoltia, and allied genera (Siluriformes)

(Figs 2–4). CORBIDI 14685, an adult male (Figs 2–4) from 13.5806 S, 75.2449 W (WGS84), Chicchobamba, upstream of Represa Negrayccassa, upper drainage of the Huaytará river, 3900 m, Provincia Huaytará, Región Huancavelica, Peru, collected by A. Catenazzi, V. Vargas García, and M. Jaico Huayanay

We describe a new species of Telmatobius from the Pacific slopes of the Andes in central Peru. Specimens were collected at 3900 m elevation near Huaytará, Huancavelica, in the upper drainage of the Pisco river. The new species has a snout–vent length of 52.5 ± 1.1 mm (49.3–55.7 mm, n = 6) in adult females, and 48.5 mm in the single adult male. The new species has bright yellow and orange coloration ventrally and is readily distinguished from all other central Peruvian Andean species of Telmatobius but T. intermedius by having vomerine teeth but lacking premaxillary and maxillary teeth, and by its slender body shape and long legs. The new species differs from T. intermedius by its larger size, flatter head, and the absence of cutaneous keratinized spicules (present even in immature females of T. intermedius), and in males by the presence of minute, densely packed nuptial spines on dorsal and medial surfaces of thumbs (large, sparsely packed nuptial spines in T. intermedius). The hyper-arid coastal valleys of Peru generally support low species richness, particularly for groups such as aquatic breeding amphibians. The discovery of a new species in this environment, and along a major highway crossing the Andes, shows that much remains to be done to document amphibian diversity in Peru.

The Tropical Andes are characterized by a large diversification of the aquatic frogs of the genus Telmatobius Wiegmann, 1834. Sixty-two species are currently recognized in this genus (AmphibiaWeb 2014; Aguilar and Valencia 2009; Frost 2014; including species previously assigned to Batrachophrynus Peters, 1873). The altitudinal distribution of Telmatobius ranges from 1000 m to 5400 m (De la Riva and Harvey 2003; Seimon et al. 2007), and its longitudinal distribution extends from the equator (T. niger Barbour & Noble, 1920, whose populations have been extirpated in Ecuador; Merino-Viteri et al. 2005) to 29°S, on the eastern slopes of the Argentinean Andes (T. contrerasi Cei, 1977). Twenty-eight species of Telmatobius are distributed in Peru (Lehr 2005; AmphibiaWeb 2014), but of these only five [T. arequipensis Vellard, 1955; T. intermedius Vellard, 1955; T. jelskii (Peters, 1873); T. peruvianus Wiegmann, 1834; T. rimac Schmidt, 1954] are known to occur in the hyper-arid coastal valleys that drain directly into the Pacific Ocean.

During October 2012 we made several surveys for the Biodiversity and Monitoring Assessment Program of the Smithsonian Conservation Biology Institute’s Center for Conservation Education and Sustainability (Catenazzi et al. 2013a; Catenazzi et al. 2013b). During one of these surveys, we found a population of Telmatobius in the upper drainage of the Huaytará river (Region of Huancavelica), a tributary of the Pisco river in the Pacific slopes of the central Peruvian Andes. Individuals of this population possess traits that do not correspond to the morphological characteristics of other species found in the arid coastal valleys of central Peru (Fig. 1), namely T. rimac to the north and T. intermedius to the south (Vellard 1951; Schmidt 1954; Lehr 2005). Therefore, here we describe the new species and provide a diagnosis to differentiate it from congeneric forms.

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Role of microbes, effect on infectious disease dynamics

In the field, UCSB graduate student Andrea Jani uses a sterile swab to sample mucus on the skin of a frog. Frogs are released unharmed after sampling. Credit: Abby Mayer

The adult human body is made up of about 37 trillion cells. Microbes, mainly bacteria, outnumber body cells by 10 to 1. Increasingly, scientists recognize that this huge community of microbes, called the microbiome, affects the health, development and evolution of all multicellular organisms, including humans.

Studies show symbiotic microbes can help prevent infection by disease-causing pathogens. But sometimes the interaction goes the other way, with a pathogen or disease disrupting the normal community of symbiotic bacteria. In a new study, a team of scientists from UC Santa Barbara demonstrates that a fungal pathogen of amphibians does just that. The findings appear today in the Early Edition of the Proceedings of the National Academy of Science.

Landmark experiments with model organisms such as mice have shown that infectious pathogens can disrupt the "normal" microbiome, but the extent to which this process shapes symbiotic microbial communities during disease outbreaks in nature is largely unknown. This new work, conducted by Andrea Jani, a UCSB graduate student in Cherie Briggs' lab in the Department of Ecology, Evolution and Marine Biology (EEMB), addresses a fundamental gap in disease ecology and microbiome research.

Co-authors Jani and Briggs -- also affiliated with UCSB's Biomolecular Science and Engineering program -- found that the chytrid fungus Batrachochytrium dendrobatidis (Bd) appears to drive dramatic changes in symbiotic bacterial communities during natural disease episodes in four populations of the endangered Sierra Nevada yellow-legged frog (Rana sierrae). Chytridiomycosis, an emerging infectious disease of amphibian skin caused by the Bd pathogen, is a leading cause of amphibian biodiversity loss worldwide.

"In the California Sierra Nevada, this disease has led to the rapid extirpation of frogs from hundreds of high-elevation lakes; however, in other lakes, infected frogs of the same species are surviving and persisting with the fungus," explained Briggs, who is the Duncan and Suzanne Mellichamp Chair in Systems Biology. "Given that amphibian skin is the organ infected by Bd, there has been a lot of interest in how antifungal properties of some skin-associated bacteria may protect frogs against this fungal pathogen. In this study we focused on the flip side of this interaction -- that is, how infection with Bd can disrupt the skin microbial community."

"We used next-generation DNA sequencing to document significant shifts in skin-associated bacterial communities of the Sierra Nevada yellow-legged frog during natural Bd outbreaks," Jani explained. "We paired these field surveys with a laboratory infection experiment, demonstrating a causal relationship in which Bd alters the Rana sierrae microbiome."

The researchers found a remarkable consistency in the response of the microbiome to Bd infection among field populations and between the field and laboratory. Several key taxa -- a group of one or more populations of an organism or organisms -- consistently responded in the same direction to Bd infection, suggesting some predictability in the effect of Bd on the microbiome.

"What we found was that the severity of infection with Bd is strongly correlated with the composition of bacterial communities on the skin of frogs," Jani continued. "What was surprising was that across the different frog populations there was pretty striking consistency in this correlation with Bd. One of the frog populations crashed due to Bd infection; the other three populations seemed to tolerate Bd infections. So there are different disease dynamics going on, yet they have a similar relationship between the microbiome and Bd."

Still, the underlying mechanism for Bd-induced changes in the microbiome is not clear. The researchers hypothesize that the pathogen might compete directly with certain bacteria for space or resources or release compounds that negatively or positively affect certain bacterial species. Alternatively, they say, some pathogens could control immune responses of the host to favor their own growth and disrupt the normal symbiotic bacterial community.

Jani noted that some promise exists for probiotic treatments as a tool to fight the decline of frogs due to Bd, but she was careful to qualify that statement by saying that there is still a lot that scientists do not understand about either the environmental impact that might have or what the interactions are between the natural bacteria that exist on frogs and the pathogen. "We find that some taxa previously identified as having anti-Bd properties are driven to low abundances by Bd infection, which may limit their effectiveness as probiotic agents," she said.

"This study shows the importance of knowing how the many benign microbes living on and in our bodies interact with those that cause disease," said Sam Scheiner, National Science Foundation (NSF) director for the joint NSF/National Institutes of Health/United States Department of Agriculture Ecology and Evolution of Infectious Disease Program, which funded the research. "The results are important for developing responses to a disease causing amphibians to go extinct worldwide and also have implications for future studies of human health.

Source:  University of California - Santa Barbara

Female frogs modify offspring development depending on reproduction date

Breeding male of Rana arvalis from the study area. Credit: Germán Orizaola

Global warming is altering the reproduction of plants and animals, notably accelerating the date when reproduction and other life processes occur. A study by the University of Uppsala (Sweden), including the participation of Spanish researcher Germán Orizaola, has discovered that some amphibians are capable of making their offspring grow at a faster rate if they have been born later due to the climate.

Over recent decades many organisms, both plants and animals, have experienced a notable advance in the date when many of their life processes (like reproduction, migration or flowering) occur, attributed to the impact of climate change. An article published in the journal Ecology examines the effects that these changes in the reproduction date have on the life cycles of the amphibians.

"We specifically examined whether changes in the reproduction date of a common amphibian species in the north of Europe, Rana arvalis, can condition the growth and development of their offspring," the Spanish researcher Germán Orizaola, from the University of Uppsala (Sweden) and co-author of the study, said.

Results revealed that female frogs have the ability to influence both the growth rate and the development of their offspring, and they adjust it depending on the date of reproduction.

According to Orizaola, "the mechanism by which the female frogs can condition the growth of their larvae could be due to the genes associated with the maintenance of their biological clock being transferred to the embryos and becoming active even before fertilisation. This would provide the larvae with the exact information regarding the progression of the growing season."

The later the birth, the faster the growth

One of the characteristics associated with climate change is an increase in the interannual variability of climatic conditions, so organisms are also exposed to greater uncertainty when it comes to determining the right time to reproduce. This explains why the existence of mechanisms adjusting growth and development rates depending on the variation in the start of breeding is highly advantageous for many species.

In particular, as part of this study they observed that by delaying the date of reproduction (which simulated a time of environmental instability), the result was an equivalent reduction in the growth period for the larvae. "That means the later this species of frog breeds, the faster the larvae develop," explains the scientist.

An interesting aspect of the study is that the acceleration in growth is produced under constant lab conditions. "The larvae were not exposed to any outside sign that would indicate the progression of the growing season," adds Orizaola.

"This result is very novel and demonstrates that the acceleration in the development of the larvae is conditioned by the breeding females, which reveals the existence of a 'transgenerational effect' in which the breeding adults are capable of altering key aspects of the life cycle for the following generations, to better prepare them to survive the environmental conditions that they are going to experience," concludes the expert.

Source: Plataforma SINC.

Scientists produce cloned embryos of extinct frog

This is a gastric-brooding frog, Rheobatrachus silus, giving oral birth in the lab of Mike Tyler of the University of Adelaide. Credit: Mike Tyler, University of Adelaide

The genome of an extinct Australian frog has been revived and reactivated by a team of scientists using sophisticated cloning technology to implant a "dead" cell nucleus into a fresh egg from another frog species.

The bizarre gastric-brooding frog, Rheobatrachus silus -- which uniquely swallowed its eggs, brooded its young in its stomach and gave birth through its mouth -- became extinct in 1983.

But the Lazarus Project team has been able to recover cell nuclei from tissues collected in the 1970s and kept for 40 years in a conventional deep freezer. The "de-extinction" project aims to bring the frog back to life.

In repeated experiments over five years, the researchers used a laboratory technique known as somatic cell nuclear transfer. They took fresh donor eggs from the distantly related Great Barred Frog, Mixophyes fasciolatus, inactivated the egg nuclei and replaced them with dead nuclei from the extinct frog. Some of the eggs spontaneously began to divide and grow to early embryo stage -- a tiny ball of many living cells.

Although none of the embryos survived beyond a few days, genetic tests confirmed that the dividing cells contain the genetic material from the extinct frog.
The results are yet to be published.

"We are watching Lazarus arise from the dead, step by exciting step," says the leader of the Lazarus Project team, Professor Mike Archer, of the University of New South Wales, in Sydney. "We've reactivated dead cells into living ones and revived the extinct frog's genome in the process. Now we have fresh cryo-preserved cells of the extinct frog to use in future cloning experiments.

"We're increasingly confident that the hurdles ahead are technological and not biological and that we will succeed. Importantly, we've demonstrated already the great promise this technology has as a conservation tool when hundreds of the world's amphibian species are in catastrophic decline."

The technical work was led by Dr Andrew French and Dr Jitong Guo, formerly of Monash University, in a University of Newcastle laboratory led by frog expert, Professor Michael Mahony, along with Mr Simon Clulow and Dr John Clulow. The frozen specimens were preserved and provided by Professor Mike Tyler, of the University of Adelaide, who extensively studied both species of gastric-brooding frog -- R. silus and R. vitellinus -- before they vanished in the wild in 1979 and 1985 respectively.

UNSW's Professor Archer spoke publicly for the first time today about the Lazarus Project and also about his ongoing interest in cloning the extinct Australian thylacine, or Tasmanian tiger, at the TEDx DeExtinction event in Washington DC, hosted by Revive and Restore and the National Geographic Society.

Researchers from around the world are gathered there to discuss progress and plans to 'de-extinct' other extinct animals and plants. Possible candidate species include the woolly mammoth, dodo, Cuban red macaw and New Zealand's giant moa.

Source: University of New South Wales

Sampling rivers for genes rather than organisms

Conventional methods used to inventory macroinvertebrates are extremely time-consuming. Credit: Image courtesy of EAWAG: Swiss Federal Institute of Aquatic Science and Technology

Effective environmental management depends on a detailed knowledge of the distribution of species. But taxonomists are in short supply, and some species can be difficult to identify, even for experts. Eawag, in collaboration with Canton Zurich, is now pursuing a new approach for species identification, requiring no more than samples of DNA shed into the environment.

If amphipods are detected in a river, are they a threatened species, or organisms indicating good water quality? Or perhaps the first arrivals of an invasive species? Conservation and environmental management call for a detailed knowledge of species. But experts capable of identifying species under the microscope on the basis of morphological characteristics are increasingly rare. Alternative methods for water monitoring would therefore be welcome. Biologists at Eawag are now pursuing a new approach for the detection of species, involving the use of environmental DNA (eDNA). Because organisms continuously release genetic material into the environment in the form of faeces, hair or skin cells, water samples collected from a river or lake contain innumerable fragments of DNA. As long as the relevant genetic code is known, these DNA segments can be assigned to particular species, using the latest molecular biological techniques and global databases.

Cantonal authorities interested
In cooperation with the Canton Zurich Office of Waste, Water, Energy and Air (AWEL), the researchers investigated whether this method is suitable for the detection of macroinvertebrates: organisms such as mayflies, amphipods, mussels or snails are important bioindicators, used in the assessment of water quality and ecotoxicity. Water samples were collected from 14 lake and river habitats in Canton Zurich for eDNA analysis, and macroinvertebrate species collected by kicknet sampling were also determined in the conventional manner.

While the two methods did not always deliver the same results, five of the six target species were reliably detected by both methods. Especially for organisms occurring in small populations, the eDNA method appears to be more sensitive. With this approach, the rare mayfly Baetis buceratus was additionally detected at two sites where no Baetis specimens where found by kicknet sampling. According to project leader Florian Altermatt, the new method may also be suitable for the detection of invasive species at an early stage of colonization. In the US and France, it is already being tested for invasive carp species.

Long-term goal: routine monitoring of biodiversity
The eDNA method offers additional advantages. As eDNA is ubiquitous in freshwater throughout the year, the findings reflect the situation of an entire catchment, and surveillance is less time-critical. By contrast, kicknet sampling merely provides a snapshot, and for many species it can only be carried out at certain stages of the life cycle and certain times of the year. For eDNA analysis, organisms do not have to be removed from a river or lake and -- in principle -- hundreds of species can be detected at the same time. This means that continuous monitoring of freshwater biodiversity could one day become possible, just as chemical parameters are routinely monitored today.

This, however, is still a long way off: apart from the need for further refinements, the method is still costly and time-consuming. The cantons currently lack the necessary infrastructure and expertise. But Altermatt believes it will not take too long for technical standards to be established, permitting efficient operation: "eDNA analysis will then cost a few hundred Swiss francs and will be cheaper than conventional surveys." However, the new method will not wholly replace the conventional approach. Altermatt argues that the benefits of both approaches should be exploited. In addition, taxonomists will remain indispensable for validation and calibration of the new procedures.

Source:  EAWAG: Swiss Federal Institute of Aquatic Science and Technology