Ultrasounds dance the 'moonwalk' in new metamaterial

Silicone beads embedded in a water-based gel (photograph is ~2 cm across). Credit: © CRPP

Metamaterials have extraordinary properties when it comes to diverting and controlling waves, especially sound and light: for instance, they can make an object invisible, or increase the resolving power of a lens. Now, researchers at the Centre de Recherche Paul Pascal (CNRS) and the Institut de Mécanique et d'Ingénierie de Bordeaux (CNRS/Université de Bordeaux/Bordeaux INP/Arts et Métiers ParisTech) have developed the first three-dimensional metamaterials by combining physico-chemical formulation and microfluidics technology. This is a new generation of soft metamaterials that are easier to shape. In their experiment, the researchers got ultrasonic oscillations to move backwards while the energy carried by the wave moved forwards. Their work opens up new prospects, especially for high-resolution imaging (ultrasonography). It is published on 15 December 2014 in the journal Nature Materials.

Since the 2000s, the international scientific community has seen interest in metamaterials and their extraordinary properties grow exponentially. A metamaterial is a medium in which the phase velocity of light or sound waves can be negative (the material is said to have a negative refractive index).. In such a medium, the phase of the wave (the successive oscillations) and the energy carried by this same wave move in opposite directions. This property is not found in any natural homogeneous medium.

To obtain a metamaterial, it is necessary to make a heterogeneous medium that contains a large number of inclusions (known as microresonators). The usual way is to use micromechanical methods (etching, deposition, etc) to machine solid supports that will have the properties of metamaterials in one or two dimensions. However, this method cannot be used to work with soft matter at the micrometer scales required for ultrasounds, and the materials obtained remain limited to one or two dimensions.

In this study, the researchers developed a new type of metamaterial, in the fluid phase, formed of porous silicone microbeads embedded in a water-based gel. This metafluid is the first three-dimensional metamaterial to work at ultrasonic frequencies. In addition, due to its fluid nature, it can be made using physico-chemical processes and microfluidics technologies, which are much easier to implement than micromechanical methods.

One of the properties of porous media is that sound travels through them at very low speed (a few tens of meters per second) compared to water (1500 meters per second). Due to this sharp contrast, the whole suspension has the properties of a metamaterial provided the bead concentration is sufficient: when the researchers studied the propagation of ultrasonic waves through this medium, they directly measured a negative refractive index. Within such a metafluid, the energy carried by the wave travels from the emitter to the receiver, as expected, whereas the oscillations appear to move backwards in the opposite direction, rather like a dancer doing the 'moonwalk'.

These results open the way to numerous applications ranging from high-resolution ultrasound imaging to sound insulation and stealth in underwater acoustics. In addition, the soft-matter physico-chemical techniques used to make this metamaterial makes it possible to produce fluid or flexible materials with adaptable shapes, potentially at the industrial scale.

Source: CNRS (Délégation Paris Michel-Ange)

The simplest element: Turning hydrogen into 'graphene'

This image is a comparison of the carbon compound graphene with a similar hydrogen-based structure synthesized by Carnegie scientists. Credit: Carneige's Ivan Naumov and Russell Hemley

New work from Carnegie's Ivan Naumov and Russell Hemley delves into the chemistry underlying some surprising recent observations about hydrogen, and reveals remarkable parallels between hydrogen and graphene under extreme pressures. Their work is the cover story in the December issue of Accounts of Chemical Research.

Hydrogen is the most-abundant element in the cosmos. With only a single electron per atom, it is deceptively simple. As a result, hydrogen has been a testing ground for theories of the chemical bond since the birth of quantum mechanics a century ago. Understanding the nature of chemical bonding in extreme environments is crucial for expanding our understanding of matter over the broad range of conditions found in the universe.

Observing hydrogen's behavior under very high pressures has been a great challenge for researchers. But recently teams have been able to observe that at pressures of 2-to-3.5 million times normal atmospheric pressure it transforms into an unexpected structure consisting of layered sheets, rather than a close-packed metal as had been predicted many years ago.

These hydrogen sheets resemble the carbon compound graphene. Graphene's layers are each constructed of a honeycomb structure made of six-atom carbon rings. This conventional carbon graphene, first synthesized about a decade ago, is very light, but incredibly strong, and conducts heat and electricity very efficiently. These properties promise revolutionary technology, including advanced optical electronics for screens, high-functioning photovoltaic cells, and enhanced batteries and other energy storage devices.

The new work from Naumov and Hemley shows that the stability of the unusual hydrogen structure arises from the intrinsic stability of its hydrogen rings. These rings form because of so-called aromaticity, which is well understood in carbon-containing molecules such as benzene, as well as in graphene. Aromatic structures take on a ring-like shape that can be thought of as alternating single and double bonded carbons. But what actually happens is that the electrons that make up these theoretically alternating bonds become delocalized and float in a shared circle around the inside of the ring, increasing stability.

Naumov and Hemley's study also indicates that hydrogen initially becomes a dark poorly conducting metal like graphite instead of a conventional shiny metal and a good conductor, as was originally suggested in theoretical calculations going back to the 1930's using early quantum mechanical models for solids.

Though the discovery of this layered sheet character of dense hydrogen has come as a surprise to many, chemists 30 years ago--before the discovery of graphene--predicted the structure based on simple chemical considerations. Their work is validated and extended by the new findings.

"Overall, our results indicate that chemical bonding occurs over a much broader range of conditions than people had previously considered. However, the structural effects of that chemical bonding under extreme conditions can be very different than that observed under the ordinary conditions that are familiar to us," Hemley said.

Source: Carnegie Institution

Smelly discovery challenges effectiveness of antimicrobial textiles

University of Alberta textiles scientist Rachel McQueen has found that anti-odor clothing may not be living up to its promise. Credit: University of Alberta

Anti-odour clothing may not be living up to its promise, and an ALES researcher is saying it could all be a matter of how the product was tested.

In two separate experiments, Human Ecology researcher Rachel McQueen and her team found that some antimicrobial textiles were far more effective at performing their advertised tasks in the lab than in testing on humans. In one experiment, the fabrics were designed to help lower the risk of infection; in the second, the fabric was treated with a silver compound, which can be marketed preventing odour in clothing.

"We aren't necessarily seeing the same results in the lab about antimicrobial activity translating into antimicrobial activity when we're wearing them next to our bodies in real life," she said.

The first experiment analyzed the effectiveness of three different textiles coated in antimicrobials triclosan, a zinc pyrithione derivative and a silver chloride-titanium dioxide compound. After putting the fabric on people's arms under plastic film for 24 hours, the silver-chloride titanium dioxide compound hardly eliminated any bacteria. Overall, they found the in vivo -- tested on humans -- results were not comparable with in vitro -- tested in the lab -- results in how they prevented microorganisms from surviving in the textile.

The second test had similar results, and tested whether polyester textiles treated with bioactive concentrations of an antimicrobial silver chloride compound reduced armpit odour and bacterial populations. Although lab testing showed antimicrobial activity, the treated fabrics did not lower odour or bacterial intensity in in vivo testing.

McQueen said that anything from sweat to the proteins in the human body can disrupt the antimicrobial properties of a fabric.

"In reality, when it goes to the point that it gets put on a textile... it may not have the same level of effectiveness as the ones they studied," she said.

McQueen said these findings highlight the importance of in vivo testing, which is less common than in vitro testing, in textile product development. But, because the textiles appear to be effective at reducing bacteria in the lab, she said they may be advertised as being anti-odourous, although they may not necessarily be so when actually worn.

So, for now, McQueen suggests thinking twice before trusting textile's advertised claims.

"It's just a real spectrum to how effective they may truly be. So I'd probably say, from a consumer's point of view, if you're actually buying something that says it's antimicrobial, it may not be," she said. "I think that's important to consider in relation to a lot of claims made about textiles, that is, to be skeptical about the claims marketers make."

McQueen's research was recently published in the International Journal of Clothing Science and Technology.

Source: University of Alberta

Mode of action of protein channelrhodopsin-2 decoded: Findings facilitate manufacture of optogenetic tools

The pore of the ion channel is opened by removing the amino acid E90. Water molecules enter and tilt Helix H2, thus opening the continuous channel. Credit: © RUB, graphics: Eisenhauer

Researchers have shed light upon the mode of action of the light-controlled channelrhodopsin-2 with high spatiotemporal resolution. This biomolecule is used in optogenetic applications, which is deployed to control the activity of living cells with light.

"The model we developed makes it possible to create customised optogenetic tools for individual applications," says Prof Dr Klaus Gerwert from the Department of Biophysics at the Ruhr-Universität Bochum. Together with colleagues at the Humboldt Universität zu Berlin from the team headed by Prof Dr Peter Hegemann, the Bochum researchers report about their finding in the magazine "Angewandte Chemie."

Channelrhodopsin-2 has revolutionised optogenetics

Discovered by Peter Hegemann in green algae, channelrhodopsin-2 is the central light-activated channel protein in optogenetics. If this ion channel is applied to nerve cells, the channels can be opened by light, thus activating the cell. "The application of channelrhodopsin-2 in optogenetics has revolutionised neurobiology in the recent years," says Klaus Gerwert. The magazine "Nature Methods" awarded this process as "Method of the Year" in 2010. "However, scientists had not been aware of what is actually happening inside a protein and thus ultimately triggers its activation," continues the Bochum researcher. But it is the understanding of processes on the atomic level that is essential for optimising the protein specifically for its applications.

"EHT" model describes the mode of action of channelrhodopsin-2

With time-resolved vibrational spectroscopy and bio-molecular simulations, the Bochum-Berlin team has now closed that gap. The EHT (E90-Helix2-tilt) model describes the mode of action of channelrhodopsin-2 as follows: the light-sensitive group of the protein, i.e. the retinal, is twistedunder incidence of light. This twist then continues in the protein and opens a pore ultra fast, which is closed by amino acid E90 in the dark. E90 marks the narrowest place in the pore and opens it through a downward move , similar to the motion of a swing door, so that water can enter an empty vestibule above the narrowest place in the pore. The entering water then tilts the protein helix H2, which eventually triggers a protein-traversing open ion channel. When forming this model, the Bochum researchers benefitted from their comprehensive experience that they had gained resolving the mechanism of light-driven proton pump bacteriorhodopsin in detail.

"Protein engineering": pioneering novel optogenetic tools

"With this structural model, the next step, i.e. protein engineering, will become possible," explains Klaus Gerwert. Through mutation of the amino acid E90, the protein's properties can be controlled in a targeted manner. The conductivity or the selectivity for certain ions could be customised for specific applications, and the protein could be specifically activated with different wavelengths.

Source: Ruhr-Universitaet-Bochum

Visualizing DNA double-strand break process for the first time

The enzyme I-DmoI (purple) is specifically associated to the double strand of DNA (yellow and green). Credit: CNIO

Scientists from the Spanish National Cancer Research Centre (CNIO), led by Guillermo Montoya, have developed a method for producing biological crystals that has allowed scientists to observe --for the first time-- DNA double chain breaks. They have also developed a computer simulation that makes this process, which lasts in the order of millionths of a second, visible to the human eye. The study is published today by the journal Nature Structural & Molecular Biology.

"We knew that enzymes, or proteins, endonucleases, are responsible for these double strand breaks, but we didn't know exactly how it worked until now," said Montoya. "In our study, we describe in detail the dynamics of this basic biological reaction mediated by the enzyme I-Dmol. Our observations can be extrapolated to many other families of endonucleases that behave identically."

DNA breaks occur in several natural processes that are vital for life: mutagenesis, synthesis, recombination and repair. In the molecular biology field, they can also be generated synthetically. Once the exact mechanism that produces these breaks has been uncovered, this knowledge can be used in multiple biotechnological applications: from the correction of mutations to treat rare and genetic diseases, to the development of genetically modified organisms.

Slow-motion reaction

Enzymes are highly specialised dynamic systems. Their nicking function could be compared, said Montoya, to a specially designed fabric-cutting machine that "it would only make a cut when a piece of clothing with a specific combination of colours passed under the blade."

In this case, researchers concentrated on observing the conformational changes that occurred in the I-Dmol active site; the area that contains the amino acids that act as a blade and produces DNA breaks.

By altering the temperature and pH balance, the CNIO team has managed to delay a chemical reaction that typically occurs in microseconds by up to ten days. Under those conditions, they have created a slow-motion film of the whole process.

"By introducing a magnesium cation we were able to trigger the enzyme reaction and subsequently to produce biological crystals and freeze them at -200ºC," said Montoya. "In that way, we were able to collect up to 185 crystal structures that represent all of the conformational changes taking place at each step of the reaction."

Finally, using computational analysis, the researchers illustrated the seven intermediate stages of the DNA chain separation process. "It is very exciting, because the elucidation of this mechanism will give us the information we need to redesign these enzymes and provide precise molecular scissors, which are essential tools for modifying the genome," he concluded.

Source: Centro Nacional de Investigaciones Oncologicas (CNIO)

Easy measurement of the effect of fine dust

The Karlsruhe Exposure System is compact and can measure fine dust concentrations directly at the location of pollution. Credit: VITROCELL Systems GmbH

Fine dusts from industry, traffic, and households are omnipresent. Still, they are difficult to capture by reliable medical measurements. KIT researchers have now developed an exposure system, by means of which biological cells are exposed to fine dust-loaded air flows in an exact and reproducible manner. Using this system, it is possible to collect data on the adverse impact of fine dusts of variable sources in a rapid and inexpensive manner and without animal experiments being needed. In cooperation with the industry partner Vitrocell, a marketable product has been developed.

"Fine dusts may be carbon black from diesel engines, sea salt on the coast, natural dusts, or intermediate products of chemical industry," Dr. Hanns-Rudolf Paur and Sonja Mülhopt of Karlsruhe Institute of Technology explain. All dust grains smaller than 10 µm, i.e. one hundredth of a millimeter, are considered to be fine dust irrespective of their chemical composition. Dust particles smaller than 10 µm easily pass the upper respiratory tract of man. "They deposit in the pulmonary alveoli and may damage the lungs due to their chemical or physical properties."

To study the effects in detail, lung cells and fine dust have to be brought together in a realistic environment. Ultimately, the processes taking place in the human body from the nose to the lungs have to be reproduced. For this purpose, the air containing the fine dust is heated up to body temperature by the Karlsruhe Exposure System. The air flow is provided with about 85% humidity and reduced to the air flow rate of the lungs. For a long-term measurement series, these conditions have to be maintained exactly and reproducibly. Finally, the particle flow passes lung cell cultures cultivated with nutrient medium. 

Depending on the type of fine dust, these cultures subsequently show symptoms of inflammation, oxidation stress, or membrane damage. In parallel, the deposited particle dose is recorded by means of a precision balance.

The new Exposure System is much closer to reality than previous methods that collected fine dust from air or exhaust gas and stirred it into the nutrient liquid. At the same time, the Exposure System works more rapidly for many applications and is cheaper than a study based on animal experiments. Thanks to its compactness, the Karlsruhe Exposure System can also be used for measurements at the place of fine dust development or pollution. "The limitations of conventional methods were overcome by the close, interdisciplinary cooperation of biologists and process engineers at KIT," the Head of the project, Sonja Mülhopt, says. "With the Karlsruhe Exposure System, we now have a technology that will improve the protection of the environment and mankind."

"Research at KIT was the basis of a process with a high industry potential," Tobias Krebs of the company Vitrocell Systems (Waldkirch) says. "Together, we now plan to commercialize this product." The impact of fine dusts plays an important role in fundamental research as well as in many areas of application. According to the EU Directive on Chemicals REACH, chemical industry is obliged to classify its products in various hazard categories. 

Manufacturers of lung medicine, such as asthma sprays, are now enabled to test new substances in a close-to-reality manner. New and old biomass fuels may also be relevant fine dust sources.

Source:  Karlsruhe Institute of Technology

New technology successfully removes heavy metals from water

Polluted water.
Credit: Image courtesy of Investigación y Desarrollo

The methods traditionally used to remove heavy metals from wastewater have limitations because they only withdraw a certain percentage and the remaining amount is very difficult to remove. This motivated a young graduate researcher at the National Polytechnic Institute (IPN) in Mexico, Gabriel Ramirez Monter, to create a technology capable of removing such contaminants at low cost and with an efficiency that surpasses existing technologies.

According to Monter Ramirez, this project led him to design some structures called dendrimers, which are highly branched molecules with shape similar to a shrub or a tree with multiple branches.
"Dendrimers adhere and spread on a microfiltration membrane; ie, thin sheets of porous material that are not normally capable of retaining heavy metals due to its pore size. Once placed, it achieves total removal of heavy metal ions in the same way a marine anemone would act, using tentacles to concentrate and catch food; in this case, the branches of the dendrimers capture pollutants, "says the researcher.

He explains that through dendrimers the team converted a microfiltration membrane into a nanofiltration one. "Another advantage of these structures is that they can be washed and reused, plus the captured metals are removed without problem."

Highlighting his business plan, which he called "Nanoestructurados Bromelia", it integrates his master's work, led by Dr. Irina Victorovna Lijanova attached to the Centre for Research and Technological Innovation (CIITEC) of the IPN, which has optimized technologies for removal of heavy metals.

Currently, the entrepreneurial project is linked to the company "Nanotecnología México" that specializes in nanomaterials with applications for the environment and is a leading provider of Mexican Oil (Pemex) in the refining area for sewage cleanup. "The firm was interested in the development of this technology and its commercialization," said Monter Ramirez.

"In Mexico, the problem of heavy metals is associated with industrial progress and important economic activities such as mining or even the oil industry, in both refining and petrochemicals; those are the markets we want to focus on," he stresses.

Source: Investigación y Desarrollo.

Was da Vinci wrong? New research shows friction and fracture are interrelated, with implications for earthquakes

Overturning conventional wisdom stretching all the way to Leonardo da Vinci, new Hebrew University of Jerusalem research shows that how things break (fracture) and how things slide (friction) are closely interrelated. The breakthrough study marks an important advance in understanding friction and fracture, with implications for describing the mechanics that drive earthquakes.

Over 500 years ago, da Vinci described how rough blocks slide over one another, providing the basis for our understanding of friction to this day. The phenomenon of fracture was always considered to be something totally different.

But new research by Prof. Jay Fineberg and his graduate student Ilya Svetlizky, at the Hebrew University's Racah Institute of Physics, has demonstrated that these two seemingly disparate processes of fracture and friction are actually intimately intertwined.

Appearing in the journal Nature, their findings create a new paradigm that's very different from the da Vinci version, and, according to the researchers, give us a new understanding of how earthquakes actually occur.

Fineberg and Svetlizky produced "laboratory earthquakes" showing that the friction caused by the sliding of two contacting blocks can only occur when the connections between the surfaces are first ruptured (that is, fractured or broken) in an orderly, "organized" process that takes place at nearly the speed of sound.

How does this happen? Before any motion can occur, the blocks are connected by interlocking rough contacts that define their interface. In order for motion to occur, these connections have to be broken. This physical process of breaking is called a fracture process. This process is described by the theory of crack propagation, say the researchers, meaning that the stresses (or forces) that exist at the front edge of a crack become highly magnified, even if the overall forces being applied are initially quite small.

"The insights gained from our study provide a new paradigm for understanding friction and give us a new, fundamental description of the mechanics and behavior that drive earthquakes, the sliding of two tectonic blocks within natural faults," says Fineberg. "In this way, we can now understand important processes that are generally hidden kilometers beneath the Earth's surface."

The research was supported by the James S. McDonnell Fund, the European Research Council (grant no. 267256) and the Israel Science Foundation (grant 76/11).

Source: Hebrew University of Jerusalem